MarvinSketch User's Guide - Table of Contents

• Installation/System Requirements
• Introduction to MarvinSketch and the MarvinSketch GUI
• Introduction
• MarvinSketch Graphical User Interface (GUI) Refernce
• Canvas
• Toolbar
• Menu bar
• Pop-up menus
• How To Use Basic MarvinSketch Functions
• Create New molecule
• Open an Existing Molecule File
• Save Molecule
• Save Molecule File
• Save Image
• Print
• How to Draw Structures
• Atoms
• Bonds
• Templates
• How to Draw Reactions
• How to Draw R-group queries
• How to Draw S-groups
• How to Draw a Graphic objects and Text Boxes
• How to Draw a Link atom
• How to Select a Structure
• How to Delete a Structure
• How to Work with Structures
  • Visually Editing the Structure
  • Editing the Source
  • Cleaning
  • Aromatic Rings
• Stereochemistry
• Structure Display Options
• Moving and Rotating
• Scaling
• Common Options
  • Molecule Format
  • Colors
  • Implicit/Explicit Hydrogens
  • Error Highlighting
• Saving Display Options
• Launching Other Windows
• Copying Files Between Programs (Cut/Copy/Paste and Drag & Drop)
• Shortcuts
• Chemical Features of MarvinSketch
• Valence Check
• Charges
• Reactions
• Mapping
• Isotopes
• E/Z feature
• S-Groups
• Working with Radicals
• Query Guide
• R-groups
• Atom Lists
• Not Lists
• Generic Atoms
• Atom Properties
• Calculator Plugins
• Elemental Analysis Plugin
• Protonation
  • pK_a Plugin
  • Major Microspecies Plugin
  • Isoelectric Point Plugin
• Partitioning
  • logP Plugin
  • logD Plugin
• Charge
  • Charge Plugin
  • Polarizability Plugin
  • Orbital Electronegativity Plugin
• Isomers
  • Tautomerization Plugin
  • Resonance Plugin
  • Stereoisomer Plugin
• Conformation
  • Conformer Plugin
  • Molecular Dynamics Plugin
• Geometry
  • Topology Analysis Plugin
  • Geometry Plugin
  • Polar Surface Area Plugin (2D)
  • Molecular Surface Area Plugin (3D)
• Other
  • Hydrogen Bond Donor-Acceptor Plugin
  • Huckel Analysis Plugin
    Refractivity Plugin

  Marvin User's Guide

  
  

  Copyright © 1998-2007 ChemAxon Ltd.

  http://www.chemaxon.com/marvin